Need to install pip3 greater that 9.0 osx mac os x#
Need to install pip3 greater that 9.0 osx mac osx#
Need to install pip3 greater that 9.0 osx install#

Need to install pip3 greater that 9.0 osx install#

Install setuptools: sudo apt-get install python-setuptools.

Install Tkinter: apt-get install python-tk (restart after).

Ensure all Ubuntu updates have been installed.

Install ordereddict (Python 2.6 or below) : easy_install ordereddictДЄdding support for python applications call Tk is particularly challenging on Ubuntu, since Python is installed but Tkinter is not.

Install cairo: recommend install from source (see INSTALL file or here for Windows users).

Install fastcluster: recommend install from source.

Install pandas: sudo easy_install pandas.

Install Imagetk: easy_install -find-links Imaging.

Install matplotlib: sudo easy_install matplotlib.

To install these, see the below instructions. Python and Tkinter are all that are needed for AltAnalyze to run, but other dependencies are required if you wish to visualize WikiPathways (suds, PIL), cluster or QC plots (Matplotlib, Numpy, Scipy) or speed up the Fisher Exact Test analysis (scipy). Test by typing python at the terminal and then import tkinter. If python or tkinter is not installed, install Python 2.7 from. Python version 2X should be default and used instead of python 3.

Need to install pip3 greater that 9.0 osx mac os x#

Instructions for Windows/Linux/Mac OS XД«y default, Mac OS X has Python installed along with Tkiner. Feel free to contact us about any problems. The program can also be initiated from a terminal command-line (e.g., './AltAnalyze in Linux). To determine if a pre-compiled version of AltAnalyze is compatible with your operating system, download the program and double-click the executable file name 'AltAnalyze'. These libraries can be installed from source code or from installers provided by the open-source project websites. Network visualization in igraph: igraph and cairo.Statistical libraries for Combat: Patsy and Pandas.PNG viewing in the GUI: Python Imaging Library (PIL) ImageTk.Visualization output files: Matplotlib, Numpy, Scipy.Graphical User Interface requirement: Tkinter.Required: Python version 2.3 or greater.

Need to install pip3 greater that 9.0 osx mac osx#

The compiled versions of AltAnalyze (Windows, Mac OSX and Ubuntu) should run immediately after extraction, however, the source code implementations may require additional Python modules installed. Optional AltAnalyze Dependencies to be Installed

Instructions for Windows/Linux/Mac OS X.

Optional AltAnalyze Dependencies to be Installed.

Performing GO-Elite within AltAnalyze #.

Installing and Running AltAnalyze via pip install.

Instructions for Obtaining RNASeq Input Files #.

Professional Biosketch - Nathan Salomonis #.

Creating Groups and Comps Outside AltAnalyze #.

**Lineage Profiler Analysis Program** #.

Professional Biosketch - Kristina Hanspers #.

Calculating Gene Expression From Exon Arrays #.

Deviation Value Splicing-Index Statistic #.

Building a Dataset Exon Database for BEDTools #.

What To Do After Getting Gene Expression Results? #.What To Do After Getting Alternative Exon Results? #.Adding a New Species for Gene Expression Analysis #.Analysis of AltAnalyze Results DomainGraph.